Authors Title Year Journal Name Volume PubMedID DOI  
Asanović I, Strandback E, Kroupova A, Pasajlic D, Meinhart A, Tsung-Pin P, Djokovic N, Anrather D, Schuetz T, Suskiewicz MJ, Sillamaa S, Köcher T, Beveridge R, Nikolic K, Schleiffer A, Jinek M, Hartl M, Clausen T, Penninger J, Macheroux P, Weitzer S, Martinez J. The oxidoreductase PYROXD1 uses NAD(P)+ as an antioxidant to sustain tRNA ligase activity in pre-tRNA splicing and unfolded protein response. 2021 Mol Cell 81(12):2520-2532.e16 PMID: 33930333 doi: 10.1016/j.molcel.2021.04.007  
Bente H, Foerster AM, Lettner N, Mittelsten Scheid O. Polyploidy-associated paramutation in Arabidopsis is determined by small RNAs, temperature, and allele structure. 2021 PLoS Genet. 17(3):e1009444 PMID: 33690630 doi: 10.1371/journal.pgen.1009444  
Budroni V, Versteeg GA. Negative Regulation of the Innate Immune Response through Proteasomal Degradation and Deubiquitination. 2021 Viruses 13(4):584 PMID: 33808506 doi: 10.3390/v13040584  
Cabrera-Quio, LE., Schleiffer, A., Mechtler, K., Pauli, A. Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition. 2021 PLoS Genet. 17(2):e1009390 PMID: 33600438 PMID: 33600438  
Cianciulli Sesso A, Lilić B, Amman F, Wolfinger MT, Sonnleitner E, Bläsi U. Gene Expression Profiling of Pseudomonas aeruginosa Upon Exposure to Colistin and Tobramycin. 2021 Front Microbiol. 12:626715 PMID: 33995291 doi: 10.3389/fmicb.2021.626715  
Demiroz D, Platanitis E, Bryant M, Fischer P, Prchal-Murphy M, Lercher A, Lassnig C, Baccarini M, Müller M, Bergthaler A, Sexl V, Dolezal M, Decker T Listeria monocytogenes infection rewires host metabolism with regulatory input from type I interferons. 2021 PLoS Pathog. 17(7):e1009697 PMID: 34237114 doi: 10.1371/journal.ppat.1009697  
Endres T, Solvie D, Heidelberger JB, Andrioletti V, Baluapuri A, Ade CP, Muhar M, Eilers U, Vos SM, Cramer P, Zuber J, Beli P, Popov N, Wolf E, Gallant P, Eilers M. Ubiquitylation of MYC couples transcription elongation with double-strand break repair at active promoters. 2021 Mol Cell 81(4):830-844.e13 PMID: 33453168 doi: 10.1016/j.molcel.2020.12.035  
Fatalska A, Stepinac E, Richter M, Kovacs L, Pietras Z, Puchinger M, Dong G, Dadlez M, Glover DM. The dimeric Golgi protein Gorab binds to Sas6 as a monomer to mediate centriole duplication. 2021 eLife 10:e57241 PMID: 33704067 doi: 10.7554/eLife.57241  
Fuchs A, Riegler S, Ayatollahi Z, Cavallari N, Giono LE, Nimeth BA, Mutanwad KV, Schweighofer A, Lucyshyn D, Barta A, Petrillo E, Kalyna M. Targeting alternative splicing by RNAi: from the differential impact on splice variants to triggering artificial pre-mRNA splicing. 2021 Nucleic Acids Res. 49(2):1133-1151. PMID: 33406240 doi: 10.1093/nar/gkaa1260  
Garbrecht J, Laos T, Holzer E, Dillinger M, Dammermann A. An acentriolar centrosome at the C. elegans ciliary base. 2021 Curr Biol. 31(11):2418-2428.e8. PMID: 33798427 doi: 10.1016/j.cub.2021.03.023  
Hagelkruys A, Wirnsberger G, Stadlmann J, Wöhner M, Horrer M, Vilagos B, Jonsson G, Kogler M, Tortola L, Novatchkova M, Bönelt P, Hoffmann D, Koglgruber R, Steffen U, Schett G, Busslinger M, Bergthaler A, Klein C, Penninger JM. A crucial role for Jagunal homolog 1 in humoral immunity and antibody glycosylation in mice and humans. 2021 J Exp Med. "4 218(1):e20200559" PMID: 32930709 doi: 10.1084/jem.20200559
Hendling M, Barišić I. Computational Design of Multiplex Oligonucleotide-Based Assays 2021 Methods Mol Biol. 2189:19-30 PMID: 33180290 doi: 10.1007/978-1-0716-0822-7_2  
Hofbauer P, Jahnel SM, Papai N, Giesshammer M, Deyett A, Schmidt C, Penc M, Tavernini K, Grdseloff N, Meledeth C, Ginistrelli LC, Ctortecka C, Šalic Š, Novatchkova M, Mendjan S. Cardioids reveal self-organizing principles of human cardiogenesis. 2021 Cell 184(12):3299-3317.e22 PMID: 34019794 doi: 10.1016/j.cell.2021.04.034  
Kostan J, Pavšič M, Puž V, Schwarz TC, Drepper F, Molt S, Graewert MA, Schreiner C, Sajko S, van der Ven PFM, Onipe A, Svergun DI, Warscheid B, Konrat R, Fürst DO, Lenarčič B, Djinović-Carugo K. Molecular basis of F-actin regulation and sarcomere assembly via myotilin. 2021 PLoS Biol. 19(4):e3001148 PMID: 33844684 doi: 10.1371/journal.pbio.3001148  
Kotov V, Mlynek G, Vesper O, Pletzer M, Wald J, Teixeira-Duarte CM, Celia H, Garcia-Alai M, Nussberger S, Buchanan SK, Morais-Cabral JH, Loew C, Djinovic-Carugo K, Marlovits TC. In-depth interrogation of protein thermal unfolding data with MoltenProt. 2021 Protein Sci. 30(1):201-217 PMID: 33140490 doi: 10.1002/pro.3986  
Kotov V, Mlynek G, Vesper O, Pletzer M, Wald J, Teixeira-Duarte CM, Celia H, Garcia-Alai M, Nussberger S, Buchanan SK, Morais-Cabral JH, Loew C, Djinovic-Carugo K, Marlovits TC. In-depth interrogation of protein thermal unfolding data with MoltenProt. 2021 Protein Sci. 30(1):201-217 PMID: 33140490 doi: 10.1002/pro.3986  
Krenn, V., Bosone, C., Burkard, TR., Spanier, J., Kalinke, U., Calistri, A., Salata, C., Rilo Christoff, R., Pestana Garcez, P., Mirazimi, A., Knoblich, JA. Organoid modeling of Zika and herpes simplex virus 1 infections reveals virus-specific responses leading to microcephaly. 2021 Cell Stem Cell   PMID: 33838105 doi: 10.1016/j.stem.2021.03.004  
Kurzbauer MT, Janisiw MP, Paulin LF, Mota IP, Tomanov K, Krsicka O, von Haeseler A, Schubert V, Schlögelhofer P ATM Controls Meiotic DNA Double-Strand Break Formation and Recombination and Affects Synaptonemal Complex Organization in Plants 2021       doi.org/10.1093/plcell/koab045  
Lackner A, Sehlke R, Garmhausen M, Giuseppe Stirparo G, Huth M, Titz-Teixeira F, van der Lelij P, Ramesmayer J, Thomas HF, Ralser M, Santini L, Galimberti E, Sarov M, Stewart AF, Smith A, Beyer A, Leeb M. Cooperative genetic networks drive embryonic stem cell transition from naïve to formative pluripotency. 2021 EMBO J. 40(8):e105776 PMID: 33687089 doi: 10.15252/embj.2020105776  
Madritsch S, Burg A, Sehr EM. Comparing de novo transcriptome assembly tools in di- and autotetraploid non-model plant species. 2021 BMC Bioinformatics 22(1):146 PMID: 33752598 doi: 10.1186/s12859-021-04078-8  
Malecka EM, Bassani F, Dendooven T, Sonnleitner E, Rozner M, Albanese TG, Resch A, Luisi B, Woodson S, Bläsi U. Stabilization of Hfq-mediated translational repression by the co-repressor Crc in Pseudomonas aeruginosa. 2021 Nucleic Acids Res.   PMID: 34139006 doi: 10.1093/nar/gkab510  
Naetar N, Georgiou K, Knapp C, Bronshtein I, Zier E, Fichtinger P, Dechat T, Garini Y, Foisner R. LAP2alpha maintains a mobile and low assembly state of A-type lamins in the nuclear interior. 2021 eLife 10:e63476 PMID: 33605210 doi: 10.7554/eLife.63476  
Parys K, Colaianni NR, Lee HS, Hohmann U, Edelbacher N, Trgovcevic A, Blahovska Z, Lee D, Mechtler A, Muhari-Portik Z, Madalinski M, Schandry N, Rodríguez-Arévalo I, Becker C, Sonnleitner E, Korte A, Bläsi U, Geldner N, Hothorn M, Jones CD, Dangl JL, Belkhadir Y. Signatures of antagonistic pleiotropy in a bacterial flagellin epitope. 2021 Cell Host Microbe 29(4):620-634.e9 PMID: 33713601 doi: 10.1016/j.chom.2021.02.008  
Pokorny D, Truebestein L, Fleming KD, Burke JE, Leonard TA. In vitro reconstitution of Sgk3 activation by phosphatidylinositol 3-phosphate. 2021 J Biol Chem. 297(2):100919. PMID: 34181950 doi: 10.1016/j.jbc.2021  
Santini L , Halbritter F, Titz-Teixeira F, Suzuki T, Asami M, Ma X, Ramesmayer J, Lackner A, Warr N, Pauler F, Hippenmeyer S, Laue E, Farlik M, Bock C, Beyer A,  Perry ACF, Leeb M. Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3. 2021 Nat Commun. 12(1):3804 PMID: 34155196 doi: 10.1038/s41467-021-23510-4  
Schloissnig S, Kawaguchi A, Nowoshilow S, Falcon F, Otsuki L, Tardivo P, Timoshevskaya N, Keinath MC, Smith JJ, Voss SR, Tanaka EM. The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci. 2021 Proc Natl Acad Sci USA 118(15):e2017176118 PMID: 33827918 doi: 10.1073/pnas.2017176118  
Schnabl J, Wang J, Hohmann U, Gehre M, Batki J, Andreev VI, Purkhauser K, Fasching N, Duchek P, Novatchkova M, Mechtler K, Plaschka C, Patel DJ, Brennecke J. Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex. 2021 Genes Dev. 35(5-6):392-409 PMID: 33574069 doi: 10.1101/gad.347989.120  
Stock J, Pauli A. Self-organized cell migration across scales - from single cell movement to tissue formation. 2021 Development 148(7):dev191767 PMID: 33824176 doi: 10.1242/dev.191767  
Thomas HF, Kotova E, Jayaram S, Pilz A, Romeike M, Lackner A, Penz T, Bock C, Leeb M, Halbritter F, Wysocka J, Buecker C. Temporal dissection of an enhancer cluster reveals distinct temporal and functional contributions of individual elements. 2021 Mol Cell 81(5):969-982.e13 PMID: 33482114 doi: 10.1016/j.molcel.2020.12.047  
Yelagandula R, Bykov A, Vogt A, Heinen R, Özkan E, Strobl MM, Baar JC, Uzunova K, Hajdusits B, Kordic D, Suljic E, Kurtovic-Kozaric A, Izetbegovic S, Schaeffer J, Hufnagl P, Zoufaly A, Seitz T, Födinger M, Allerberger F, Stark A, Cochella L, Elling U. Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq. 2021 Nat Commun. 12(1):3132 PMID: 34035246 doi: 10.1038/s41467-021-22664-5